STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSAPOP00000005201RING-type domain-containing protein. (108 aa)    
Predicted Functional Partners:
LOC110969620
Interferon regulatory factor 3.
   
 0.705
ifih1
Interferon induced with helicase C domain 1.
   
 0.681
dhx58
DEXH (Asp-Glu-X-His) box polypeptide 58.
   
 0.677
trim32
Tripartite motif containing 32.
    
 0.659
LOC110954209
Uncharacterized protein.
    
 0.592
rps27a
Ribosomal protein S27a.
    
  0.571
ENSAPOP00000003675
Ubiquitin-like domain-containing protein.
    
  0.568
LOC110960072
Caspase b, like; Belongs to the peptidase C14A family.
   
 0.566
irf7
Interferon regulatory factor 7.
    
 0.564
pycard
PYD and CARD domain containing.
    
  0.530
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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