dera protein (Acanthochromis polyacanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

dera

Deoxyribose-phosphate aldolase (putative). (318 aa)

Predicted Functional Partners:

TYMP

0.963

aldh16a1

0.948

tpi1

0.936

LOC110961363

0.936

aldh2

0.936

taldo1

0.933

LOC110955250

0.929

TKT

0.929

LOC110949653

0.929

pgm2l1

0.928

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC110949653	LOC110955250	ENSAPOP00000015196	ENSAPOP00000002931	Transketolase b.	Transketolase a.	0.873
LOC110949653	LOC110961363	ENSAPOP00000015196	ENSAPOP00000016244	Transketolase b.	Triosephosphate isomerase.	0.965
LOC110949653	TKT	ENSAPOP00000015196	ENSAPOP00000008928	Transketolase b.	Transketolase.	0.865
LOC110949653	aldh16a1	ENSAPOP00000015196	ENSAPOP00000017934	Transketolase b.	Aldehyde dehydrogenase 16 family, member A1.	0.619
LOC110949653	aldh2	ENSAPOP00000015196	ENSAPOP00000018245	Transketolase b.	Aldehyde dehydrogenase 2 family member, tandem duplicate 2; Belongs to the aldehyde dehydrogenase family.	0.619
LOC110949653	dera	ENSAPOP00000015196	ENSAPOP00000005336	Transketolase b.	Deoxyribose-phosphate aldolase (putative).	0.929
LOC110949653	pgm2l1	ENSAPOP00000015196	ENSAPOP00000007159	Transketolase b.	Phosphoglucomutase 2-like 1.	0.890
LOC110949653	taldo1	ENSAPOP00000015196	ENSAPOP00000001078	Transketolase b.	Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.	0.996
LOC110949653	tpi1	ENSAPOP00000015196	ENSAPOP00000011251	Transketolase b.	Triosephosphate isomerase.	0.965
LOC110955250	LOC110949653	ENSAPOP00000002931	ENSAPOP00000015196	Transketolase a.	Transketolase b.	0.873
LOC110955250	LOC110961363	ENSAPOP00000002931	ENSAPOP00000016244	Transketolase a.	Triosephosphate isomerase.	0.971
LOC110955250	TKT	ENSAPOP00000002931	ENSAPOP00000008928	Transketolase a.	Transketolase.	0.873
LOC110955250	aldh16a1	ENSAPOP00000002931	ENSAPOP00000017934	Transketolase a.	Aldehyde dehydrogenase 16 family, member A1.	0.619
LOC110955250	aldh2	ENSAPOP00000002931	ENSAPOP00000018245	Transketolase a.	Aldehyde dehydrogenase 2 family member, tandem duplicate 2; Belongs to the aldehyde dehydrogenase family.	0.619
LOC110955250	dera	ENSAPOP00000002931	ENSAPOP00000005336	Transketolase a.	Deoxyribose-phosphate aldolase (putative).	0.929
LOC110955250	pgm2l1	ENSAPOP00000002931	ENSAPOP00000007159	Transketolase a.	Phosphoglucomutase 2-like 1.	0.909
LOC110955250	taldo1	ENSAPOP00000002931	ENSAPOP00000001078	Transketolase a.	Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.	0.996
LOC110955250	tpi1	ENSAPOP00000002931	ENSAPOP00000011251	Transketolase a.	Triosephosphate isomerase.	0.971
LOC110961363	LOC110949653	ENSAPOP00000016244	ENSAPOP00000015196	Triosephosphate isomerase.	Transketolase b.	0.965
LOC110961363	LOC110955250	ENSAPOP00000016244	ENSAPOP00000002931	Triosephosphate isomerase.	Transketolase a.	0.971