Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSAPOP00000005356RRM domain-containing protein. (242 aa)    
Predicted Functional Partners:
uba5
Ubiquitin-like modifier activating enzyme 5.
    
   0.974
cdc20b
Uncharacterized protein.
    
 
 0.863
cdc20
Cell division cycle 20 homolog.
    
 
 0.863
nelfcd
Negative elongation factor complex member C/D.
    
 0.780
LOC110955129
RRM domain-containing protein.
  
 
 0.772
LOC110948399
Serine and arginine rich splicing factor 2a.
  
 
 0.762
serf2
Small EDRK-rich factor 2.
    
   0.757
ncbp2
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]
  
 
 0.737
MSI1
Musashi RNA binding protein 1.
  
 
 0.735
LOC110953071
Uncharacterized protein.
  
 
 0.728
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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