Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PRPHPeripherin; Belongs to the intermediate filament family. (498 aa)    
Predicted Functional Partners:
LOC110964996
IF rod domain-containing protein; Belongs to the intermediate filament family.
    
   0.929
LOC110950504
IF rod domain-containing protein; Belongs to the intermediate filament family.
   
  0.863
LOC110967550
IF rod domain-containing protein; Belongs to the intermediate filament family.
   
  0.863
ina
Internexin neuronal intermediate filament protein, alpha b; Belongs to the intermediate filament family.
   
  0.863
NEFL
Neurofilament light; Belongs to the intermediate filament family.
   
  0.863
nefm
Neurofilament, medium polypeptide a; Belongs to the intermediate filament family.
   
  0.863
nefh
IF rod domain-containing protein; Belongs to the intermediate filament family.
   
  0.833
LOC110953683
Uncharacterized protein.
   
  0.728
UTP14C
UTP14C small subunit processome component.
     
  0.661
PARP11
Poly [ADP-ribose] polymerase.
      
 0.632
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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