arih1 protein (Acanthochromis polyacanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

arih1

RBR-type E3 ubiquitin transferase. (529 aa)

Predicted Functional Partners:

rps27a

0.986

uba52

0.986

LOC110955007

0.979

LOC110960410

0.975

CUL3

0.975

ENSAPOP00000021574

0.971

LOC110971799

0.969

cul1

0.968

rbx1

0.957

ENSAPOP00000003675

0.955

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUL3	ENSAPOP00000003675	ENSAPOP00000020067	ENSAPOP00000003675	Cullin 3; Belongs to the cullin family.	Ubiquitin-like domain-containing protein.	0.822
CUL3	ENSAPOP00000021574	ENSAPOP00000020067	ENSAPOP00000021574	Cullin 3; Belongs to the cullin family.	Ubiquitin-like domain-containing protein.	0.664
CUL3	LOC110955007	ENSAPOP00000020067	ENSAPOP00000011319	Cullin 3; Belongs to the cullin family.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.448
CUL3	LOC110960410	ENSAPOP00000020067	ENSAPOP00000007501	Cullin 3; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.865
CUL3	LOC110971799	ENSAPOP00000020067	ENSAPOP00000015592	Cullin 3; Belongs to the cullin family.	Ubiquitin-conjugating enzyme E2L 3b; Belongs to the ubiquitin-conjugating enzyme family.	0.448
CUL3	arih1	ENSAPOP00000020067	ENSAPOP00000005682	Cullin 3; Belongs to the cullin family.	RBR-type E3 ubiquitin transferase.	0.975
CUL3	cul1	ENSAPOP00000020067	ENSAPOP00000000646	Cullin 3; Belongs to the cullin family.	Cullin 1b; Belongs to the cullin family.	0.943
CUL3	rbx1	ENSAPOP00000020067	ENSAPOP00000011465	Cullin 3; Belongs to the cullin family.	Ring-box 1, E3 ubiquitin protein ligase.	0.992
CUL3	rps27a	ENSAPOP00000020067	ENSAPOP00000019340	Cullin 3; Belongs to the cullin family.	Ribosomal protein S27a.	0.802
CUL3	uba52	ENSAPOP00000020067	ENSAPOP00000026882	Cullin 3; Belongs to the cullin family.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.845
ENSAPOP00000003675	CUL3	ENSAPOP00000003675	ENSAPOP00000020067	Ubiquitin-like domain-containing protein.	Cullin 3; Belongs to the cullin family.	0.822
ENSAPOP00000003675	ENSAPOP00000021574	ENSAPOP00000003675	ENSAPOP00000021574	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.982
ENSAPOP00000003675	LOC110955007	ENSAPOP00000003675	ENSAPOP00000011319	Ubiquitin-like domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.966
ENSAPOP00000003675	LOC110960410	ENSAPOP00000003675	ENSAPOP00000007501	Ubiquitin-like domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.822
ENSAPOP00000003675	LOC110971799	ENSAPOP00000003675	ENSAPOP00000015592	Ubiquitin-like domain-containing protein.	Ubiquitin-conjugating enzyme E2L 3b; Belongs to the ubiquitin-conjugating enzyme family.	0.966
ENSAPOP00000003675	arih1	ENSAPOP00000003675	ENSAPOP00000005682	Ubiquitin-like domain-containing protein.	RBR-type E3 ubiquitin transferase.	0.955
ENSAPOP00000003675	cul1	ENSAPOP00000003675	ENSAPOP00000000646	Ubiquitin-like domain-containing protein.	Cullin 1b; Belongs to the cullin family.	0.822
ENSAPOP00000003675	rbx1	ENSAPOP00000003675	ENSAPOP00000011465	Ubiquitin-like domain-containing protein.	Ring-box 1, E3 ubiquitin protein ligase.	0.942
ENSAPOP00000003675	rps27a	ENSAPOP00000003675	ENSAPOP00000019340	Ubiquitin-like domain-containing protein.	Ribosomal protein S27a.	0.994
ENSAPOP00000003675	uba52	ENSAPOP00000003675	ENSAPOP00000026882	Ubiquitin-like domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.982