Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC110953983FYVE, RhoGEF and PH domain containing 5a. (1409 aa)    
Predicted Functional Partners:
LOC110967465
Ras-related GTP binding A.
    
 
 0.662
rubcn
Rubicon autophagy regulator.
    
 0.643
LOC110948886
Single-pass membrane protein with aspartate-rich tail 1b.
    
 0.621
ENSAPOP00000004648
Single-pass membrane protein with aspartate-rich tail 1a.
    
 0.621
uhmk1
U2AF homology motif (UHM) kinase 1.
      
 0.598
LOC110970569
RAB4B, member RAS oncogene family.
    
  0.587
rab4a
RAB4a, member RAS oncogene family.
    
  0.587
rptor
Regulatory associated protein of MTOR, complex 1.
    
 
 0.585
micu1
Mitochondrial calcium uptake 1.
   
 0.584
micu2
Mitochondrial calcium uptake 2.
   
 0.584
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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