Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSAPOP00000005758Ras homolog gene family, member Gd. (128 aa)    
Predicted Functional Partners:
LOC110961395
Engulfment and cell motility 3.
    
 0.954
LOC110948410
Engulfment and cell motility 3.
    
 0.954
LOC110956490
Engulfment and cell motility 1.
    
 0.946
LOC110954247
PH domain-containing protein.
    
 0.946
elmo2
Engulfment and cell motility 2.
    
 0.946
ARHGEF26
Rho guanine nucleotide exchange factor 26.
    
 0.938
ktn1
Kinectin 1.
    
 0.913
ENSAPOP00000030863
Intersectin 2a.
    
 0.903
LOC110950796
Intersectin 2b.
    
 0.903
dock1
Dedicator of cytokinesis 1; Belongs to the DOCK family.
   
 0.886
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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