Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
usp30Ubiquitin carboxyl-terminal hydrolase. (503 aa)    
Predicted Functional Partners:
rps27a
Ribosomal protein S27a.
    
 0.981
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.973
TOMM20
Translocase of outer mitochondrial membrane 20.
    
 0.958
LOC110969212
Translocase of outer mitochondrial membrane 20b.
    
 0.958
ENSAPOP00000003675
Ubiquitin-like domain-containing protein.
    
 0.956
tomm70
Translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae).
    
 0.949
rhot2
Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.
     
 0.919
LOC110966255
Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.
     
 0.919
LOC110950951
Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.
     
 0.919
tada3
Transcriptional adaptor 3 (NGG1 homolog, yeast)-like.
    
 0.918
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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