ENSAPOP00000005885 protein (Acanthochromis polyacanthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSAPOP00000005885

Uncharacterized protein. (447 aa)

Predicted Functional Partners:

skp1

0.804

pcgf1

0.731

pcgf6

0.731

LOC110964796

0.726

bcl6

0.726

LOC110967768

0.726

ift81

0.672

ENSAPOP00000007183

0.636

birc6

0.636

traf7

0.634

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPOP00000005885	ENSAPOP00000007183	ENSAPOP00000005885	ENSAPOP00000007183	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.636
ENSAPOP00000005885	LOC110964796	ENSAPOP00000005885	ENSAPOP00000011992	Uncharacterized protein.	Uncharacterized protein.	0.726
ENSAPOP00000005885	LOC110967768	ENSAPOP00000005885	ENSAPOP00000034168	Uncharacterized protein.	BCL6B transcription repressor.	0.726
ENSAPOP00000005885	bcl6	ENSAPOP00000005885	ENSAPOP00000015009	Uncharacterized protein.	BCL6A transcription repressor a.	0.726
ENSAPOP00000005885	birc6	ENSAPOP00000005885	ENSAPOP00000007195	Uncharacterized protein.	Baculoviral IAP repeat containing 6.	0.636
ENSAPOP00000005885	ift81	ENSAPOP00000005885	ENSAPOP00000033955	Uncharacterized protein.	Intraflagellar transport 81 homolog.	0.672
ENSAPOP00000005885	pcgf1	ENSAPOP00000005885	ENSAPOP00000002876	Uncharacterized protein.	Polycomb group ring finger 1.	0.731
ENSAPOP00000005885	pcgf6	ENSAPOP00000005885	ENSAPOP00000023320	Uncharacterized protein.	Polycomb group ring finger 6.	0.731
ENSAPOP00000005885	skp1	ENSAPOP00000005885	ENSAPOP00000016367	Uncharacterized protein.	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	0.804
ENSAPOP00000005885	traf7	ENSAPOP00000005885	ENSAPOP00000014100	Uncharacterized protein.	TNF receptor-associated factor 7.	0.634
ENSAPOP00000007183	ENSAPOP00000005885	ENSAPOP00000007183	ENSAPOP00000005885	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.636
ENSAPOP00000007183	birc6	ENSAPOP00000007183	ENSAPOP00000007195	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Baculoviral IAP repeat containing 6.	0.992
ENSAPOP00000007183	pcgf1	ENSAPOP00000007183	ENSAPOP00000002876	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Polycomb group ring finger 1.	0.467
ENSAPOP00000007183	pcgf6	ENSAPOP00000007183	ENSAPOP00000023320	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Polycomb group ring finger 6.	0.467
ENSAPOP00000007183	skp1	ENSAPOP00000007183	ENSAPOP00000016367	UBIQUITIN_CONJUGAT_2 domain-containing protein.	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	0.933
ENSAPOP00000007183	traf7	ENSAPOP00000007183	ENSAPOP00000014100	UBIQUITIN_CONJUGAT_2 domain-containing protein.	TNF receptor-associated factor 7.	0.980
LOC110964796	ENSAPOP00000005885	ENSAPOP00000011992	ENSAPOP00000005885	Uncharacterized protein.	Uncharacterized protein.	0.726
LOC110964796	bcl6	ENSAPOP00000011992	ENSAPOP00000015009	Uncharacterized protein.	BCL6A transcription repressor a.	0.827
LOC110964796	skp1	ENSAPOP00000011992	ENSAPOP00000016367	Uncharacterized protein.	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	0.460
LOC110967768	ENSAPOP00000005885	ENSAPOP00000034168	ENSAPOP00000005885	BCL6B transcription repressor.	Uncharacterized protein.	0.726