Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC110950458PAS domain-containing protein. (1506 aa)    
Predicted Functional Partners:
fbxw11
F-box and WD repeat domain containing 11a.
    
 0.967
timeless
Timeless circadian clock.
   
 0.961
LOC110952275
Cryptochrome circadian regulator 3a.
   
 0.927
CLOCK
Clock circadian regulator a.
    
 0.924
LOC110964232
Clock circadian regulator b.
    
 0.924
LOC110967463
Neuronal PAS domain protein 2.
    
 0.924
LOC110949744
Si:ch1073-390k14.1.
   
 0.923
LOC110969994
Cryptochrome circadian regulator 2.
   
 0.923
LOC110961194
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
    
 0.916
LOC110967624
Casein kinase 1, epsilon; Belongs to the protein kinase superfamily.
    
 0.916
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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