Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC110959951D-aminoacyl-tRNA deacylase 2. (166 aa)    
Predicted Functional Partners:
rbm42
RNA binding motif protein 42.
      
 0.673
yars1
Tyrosine--tRNA ligase.
  
 
 0.652
PPP6C
Serine/threonine-protein phosphatase.
   
   0.630
LOC110961998
Serine/threonine-protein phosphatase.
   
   0.630
nubpl
Nucleotide binding protein-like.
  
  
 0.614
cmpk2
Cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial.
     
 0.549
yars2
Tyrosine--tRNA ligase.
     
 0.533
scfd1
Sec1 family domain containing 1; Belongs to the STXBP/unc-18/SEC1 family.
      
 0.529
dtd1
D-aminoacyl-tRNA deacylase.
      
 0.503
coch
Coagulation factor C homolog, cochlin (Limulus polyphemus).
      
 0.496
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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