abce1 protein (Acanthochromis polyacanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

abce1

ATP-binding cassette, sub-family E (OABP), member 1. (599 aa)

Predicted Functional Partners:

etf1

0.994

rps23

0.991

eif3j

0.989

eif3b

0.986

rps18

0.985

rps13

0.985

rps7

0.984

rps9

0.984

rack1

0.983

eif2s1

0.982

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
abce1	eif2s1	ENSAPOP00000006182	ENSAPOP00000013783	ATP-binding cassette, sub-family E (OABP), member 1.	Eukaryotic translation initiation factor 2, subunit 1 alpha b.	0.982
abce1	eif3b	ENSAPOP00000006182	ENSAPOP00000001046	ATP-binding cassette, sub-family E (OABP), member 1.	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	0.986
abce1	eif3j	ENSAPOP00000006182	ENSAPOP00000026482	ATP-binding cassette, sub-family E (OABP), member 1.	Eukaryotic translation initiation factor 3 subunit J; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.989
abce1	etf1	ENSAPOP00000006182	ENSAPOP00000003151	ATP-binding cassette, sub-family E (OABP), member 1.	Eukaryotic translation termination factor 1b.	0.994
abce1	rack1	ENSAPOP00000006182	ENSAPOP00000007439	ATP-binding cassette, sub-family E (OABP), member 1.	Receptor for activated C kinase 1.	0.983
abce1	rps13	ENSAPOP00000006182	ENSAPOP00000009146	ATP-binding cassette, sub-family E (OABP), member 1.	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	0.985
abce1	rps18	ENSAPOP00000006182	ENSAPOP00000001587	ATP-binding cassette, sub-family E (OABP), member 1.	Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.	0.985
abce1	rps23	ENSAPOP00000006182	ENSAPOP00000023671	ATP-binding cassette, sub-family E (OABP), member 1.	Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	0.991
abce1	rps7	ENSAPOP00000006182	ENSAPOP00000012126	ATP-binding cassette, sub-family E (OABP), member 1.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.984
abce1	rps9	ENSAPOP00000006182	ENSAPOP00000013511	ATP-binding cassette, sub-family E (OABP), member 1.	Ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	0.984
eif2s1	abce1	ENSAPOP00000013783	ENSAPOP00000006182	Eukaryotic translation initiation factor 2, subunit 1 alpha b.	ATP-binding cassette, sub-family E (OABP), member 1.	0.982
eif2s1	eif3b	ENSAPOP00000013783	ENSAPOP00000001046	Eukaryotic translation initiation factor 2, subunit 1 alpha b.	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	0.998
eif2s1	eif3j	ENSAPOP00000013783	ENSAPOP00000026482	Eukaryotic translation initiation factor 2, subunit 1 alpha b.	Eukaryotic translation initiation factor 3 subunit J; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.994
eif2s1	etf1	ENSAPOP00000013783	ENSAPOP00000003151	Eukaryotic translation initiation factor 2, subunit 1 alpha b.	Eukaryotic translation termination factor 1b.	0.895
eif2s1	rack1	ENSAPOP00000013783	ENSAPOP00000007439	Eukaryotic translation initiation factor 2, subunit 1 alpha b.	Receptor for activated C kinase 1.	0.978
eif2s1	rps13	ENSAPOP00000013783	ENSAPOP00000009146	Eukaryotic translation initiation factor 2, subunit 1 alpha b.	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	0.992
eif2s1	rps18	ENSAPOP00000013783	ENSAPOP00000001587	Eukaryotic translation initiation factor 2, subunit 1 alpha b.	Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.	0.989
eif2s1	rps23	ENSAPOP00000013783	ENSAPOP00000023671	Eukaryotic translation initiation factor 2, subunit 1 alpha b.	Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	0.993
eif2s1	rps7	ENSAPOP00000013783	ENSAPOP00000012126	Eukaryotic translation initiation factor 2, subunit 1 alpha b.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.986
eif2s1	rps9	ENSAPOP00000013783	ENSAPOP00000013511	Eukaryotic translation initiation factor 2, subunit 1 alpha b.	Ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	0.986