Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC110960455Uncharacterized protein. (219 aa)    
Predicted Functional Partners:
figla
Folliculogenesis specific bHLH transcription factor.
   
 0.764
ldb1
LIM-domain binding 1b.
    
 0.762
LOC110959119
LIM domain binding 1a.
    
 0.762
LOC110956568
LIM domain binding 2a.
    
 0.762
nme9
NME/NM23 family member 8; Belongs to the NDK family.
    
   0.690
ENSAPOP00000007796
EDAR-associated death domain.
      
 0.636
srf
MADS-box domain-containing protein.
    
 0.570
SRF
Serum response factor.
    
 0.570
dlx1
Distal-less homeobox 1a.
   
  
 0.551
ascl1
Achaete-scute family bHLH transcription factor 1a.
    
 0.547
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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