tbc1d1 protein (Acanthochromis polyacanthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

tbc1d1

TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1. (1407 aa)

Predicted Functional Partners:

rab14

0.911

LOC110969016

0.911

rab2a

0.910

LOC110968494

0.871

LOC110950716

0.871

LOC110954587

0.871

ENSAPOP00000031699

0.871

prkaa1

0.866

prkaa2

0.866

PRKAB2

0.832

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPOP00000031699	LOC110954587	ENSAPOP00000031699	ENSAPOP00000025257	Uncharacterized protein.	RAB11a, member RAS oncogene family, like.	0.873
ENSAPOP00000031699	LOC110968494	ENSAPOP00000031699	ENSAPOP00000015289	Uncharacterized protein.	RAB11a, member RAS oncogene family.	0.873
ENSAPOP00000031699	LOC110969016	ENSAPOP00000031699	ENSAPOP00000034747	Uncharacterized protein.	Uncharacterized protein.	0.403
ENSAPOP00000031699	rab14	ENSAPOP00000031699	ENSAPOP00000025509	Uncharacterized protein.	RAB14, member RAS oncogene family.	0.403
ENSAPOP00000031699	rab2a	ENSAPOP00000031699	ENSAPOP00000007196	Uncharacterized protein.	RAB2A, member RAS oncogene family.	0.710
ENSAPOP00000031699	tbc1d1	ENSAPOP00000031699	ENSAPOP00000006348	Uncharacterized protein.	TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1.	0.871
LOC110950716	LOC110954587	ENSAPOP00000019937	ENSAPOP00000025257	Uncharacterized protein.	RAB11a, member RAS oncogene family, like.	0.873
LOC110950716	LOC110968494	ENSAPOP00000019937	ENSAPOP00000015289	Uncharacterized protein.	RAB11a, member RAS oncogene family.	0.873
LOC110950716	LOC110969016	ENSAPOP00000019937	ENSAPOP00000034747	Uncharacterized protein.	Uncharacterized protein.	0.403
LOC110950716	rab14	ENSAPOP00000019937	ENSAPOP00000025509	Uncharacterized protein.	RAB14, member RAS oncogene family.	0.403
LOC110950716	rab2a	ENSAPOP00000019937	ENSAPOP00000007196	Uncharacterized protein.	RAB2A, member RAS oncogene family.	0.710
LOC110950716	tbc1d1	ENSAPOP00000019937	ENSAPOP00000006348	Uncharacterized protein.	TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1.	0.871
LOC110954587	ENSAPOP00000031699	ENSAPOP00000025257	ENSAPOP00000031699	RAB11a, member RAS oncogene family, like.	Uncharacterized protein.	0.873
LOC110954587	LOC110950716	ENSAPOP00000025257	ENSAPOP00000019937	RAB11a, member RAS oncogene family, like.	Uncharacterized protein.	0.873
LOC110954587	LOC110968494	ENSAPOP00000025257	ENSAPOP00000015289	RAB11a, member RAS oncogene family, like.	RAB11a, member RAS oncogene family.	0.873
LOC110954587	LOC110969016	ENSAPOP00000025257	ENSAPOP00000034747	RAB11a, member RAS oncogene family, like.	Uncharacterized protein.	0.403
LOC110954587	rab14	ENSAPOP00000025257	ENSAPOP00000025509	RAB11a, member RAS oncogene family, like.	RAB14, member RAS oncogene family.	0.403
LOC110954587	rab2a	ENSAPOP00000025257	ENSAPOP00000007196	RAB11a, member RAS oncogene family, like.	RAB2A, member RAS oncogene family.	0.710
LOC110954587	tbc1d1	ENSAPOP00000025257	ENSAPOP00000006348	RAB11a, member RAS oncogene family, like.	TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1.	0.871
LOC110968494	ENSAPOP00000031699	ENSAPOP00000015289	ENSAPOP00000031699	RAB11a, member RAS oncogene family.	Uncharacterized protein.	0.873