Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC110955119Serine/arginine repetitive matrix 2. (1338 aa)    
Predicted Functional Partners:
srrm1
Serine/arginine repetitive matrix 1.
   
 0.997
LOC110963232
RNA binding motif protein 25b.
   
 0.980
LOC110969183
RNA binding motif protein 25a.
   
 0.980
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
    
 0.978
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
    
 0.971
cwc22
CWC22 spliceosome associated protein homolog.
    
 0.971
LOC110962189
Small nuclear ribonucleoprotein 70 (U1).
   
 0.967
syf2
SYF2 pre-mRNA-splicing factor.
    
 0.966
ENSAPOP00000000298
Cir_N domain-containing protein.
   
 0.963
dhx38
DEAH (Asp-Glu-Ala-His) box polypeptide 38.
    
 0.961
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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