Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSAPOP00000006399Ring finger protein 24. (185 aa)    
Predicted Functional Partners:
clrn3
Clarin 3.
      
 0.814
ubox5
U-box domain containing 5.
    
 0.758
ubxn7
UBX domain-containing protein 7.
   
 
 0.741
rps27a
Ribosomal protein S27a.
    
 0.712
ENSAPOP00000003675
Ubiquitin-like domain-containing protein.
    
  0.692
cdh22
Cadherin 22; Cadherins are calcium-dependent cell adhesion proteins.
   
  
 0.678
vps16
Vacuolar protein sorting 16 homolog.
      
 0.675
ENSAPOP00000000334
Family with sequence similarity 113.
      
 0.670
rwdd1
RWD domain containing 1.
      
 0.659
kctd9
Potassium channel tetramerization domain containing 9a.
      
 0.657
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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