ENSAPOP00000006484 protein (Acanthochromis polyacanthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSAPOP00000006484

Uncharacterized protein. (344 aa)

Predicted Functional Partners:

kmt2e

0.855

suv39h1

0.848

cdyl

0.846

CDYL2

0.846

dot1l

0.843

setd2

0.816

ash2l

0.806

CBX1

0.804

LOC110955790

0.804

CBX1-2

0.804

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBX1	ENSAPOP00000006484	ENSAPOP00000005757	ENSAPOP00000006484	Uncharacterized protein.	Uncharacterized protein.	0.804
CBX1	setd2	ENSAPOP00000005757	ENSAPOP00000011456	Uncharacterized protein.	SET domain containing 2, histone lysine methyltransferase.	0.610
CBX1	suv39h1	ENSAPOP00000005757	ENSAPOP00000001086	Uncharacterized protein.	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	0.939
CBX1-2	ENSAPOP00000006484	ENSAPOP00000029816	ENSAPOP00000006484	Chromobox 1.	Uncharacterized protein.	0.804
CBX1-2	setd2	ENSAPOP00000029816	ENSAPOP00000011456	Chromobox 1.	SET domain containing 2, histone lysine methyltransferase.	0.610
CBX1-2	suv39h1	ENSAPOP00000029816	ENSAPOP00000001086	Chromobox 1.	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	0.939
CDYL2	ENSAPOP00000006484	ENSAPOP00000028465	ENSAPOP00000006484	Chromodomain Y like 2.	Uncharacterized protein.	0.846
CDYL2	cdyl	ENSAPOP00000028465	ENSAPOP00000018886	Chromodomain Y like 2.	Chromodomain protein, Y-like.	0.733
CDYL2	setd2	ENSAPOP00000028465	ENSAPOP00000011456	Chromodomain Y like 2.	SET domain containing 2, histone lysine methyltransferase.	0.742
CDYL2	suv39h1	ENSAPOP00000028465	ENSAPOP00000001086	Chromodomain Y like 2.	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	0.846
ENSAPOP00000006484	CBX1	ENSAPOP00000006484	ENSAPOP00000005757	Uncharacterized protein.	Uncharacterized protein.	0.804
ENSAPOP00000006484	CBX1-2	ENSAPOP00000006484	ENSAPOP00000029816	Uncharacterized protein.	Chromobox 1.	0.804
ENSAPOP00000006484	CDYL2	ENSAPOP00000006484	ENSAPOP00000028465	Uncharacterized protein.	Chromodomain Y like 2.	0.846
ENSAPOP00000006484	LOC110955790	ENSAPOP00000006484	ENSAPOP00000025675	Uncharacterized protein.	Chromobox homolog 3a (HP1 gamma homolog, Drosophila).	0.804
ENSAPOP00000006484	ash2l	ENSAPOP00000006484	ENSAPOP00000026054	Uncharacterized protein.	Ash2 like, histone lysine methyltransferase complex subunit.	0.806
ENSAPOP00000006484	cdyl	ENSAPOP00000006484	ENSAPOP00000018886	Uncharacterized protein.	Chromodomain protein, Y-like.	0.846
ENSAPOP00000006484	dot1l	ENSAPOP00000006484	ENSAPOP00000011795	Uncharacterized protein.	Histone-lysine N-methyltransferase, H3 lysine-79 specific.	0.843
ENSAPOP00000006484	kmt2e	ENSAPOP00000006484	ENSAPOP00000001239	Uncharacterized protein.	Lysine (K)-specific methyltransferase 2E.	0.855
ENSAPOP00000006484	setd2	ENSAPOP00000006484	ENSAPOP00000011456	Uncharacterized protein.	SET domain containing 2, histone lysine methyltransferase.	0.816
ENSAPOP00000006484	suv39h1	ENSAPOP00000006484	ENSAPOP00000001086	Uncharacterized protein.	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	0.848