Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC110966998Uncharacterized protein; Belongs to the AAA ATPase family. (447 aa)    
Predicted Functional Partners:
vta1
Vesicle (multivesicular body) trafficking 1.
   
 0.985
chmp3
Charged multivesicular body protein 3.
   
 0.982
chmp2a
Charged multivesicular body protein 2A.
    
 0.981
chmp2b
Charged multivesicular body protein 2Bb.
   
 0.979
ist1
IST1 factor associated with ESCRT-III.
   
 0.965
chmp1b
Chromatin modifying protein 1B.
   
 0.963
LOC110958569
Uncharacterized protein.
   
 0.963
chmp1a
Charged multivesicular body protein 1A.
   
 0.961
LOC110953934
Charged multivesicular body protein 6a.
    
 0.961
LOC110948506
Charged multivesicular body protein 6.
    
 0.961
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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