Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC110967008Ankyrin repeat domain 29. (298 aa)    
Predicted Functional Partners:
LOC110968936
Adducin 2 (beta).
    
  0.789
add3
Adducin 3 (gamma) a.
    
  0.789
add1
Adducin 1 (alpha).
    
  0.789
LOC110953652
Adducin 3 (gamma) b.
    
  0.789
tfcp2
Transcription factor CP2.
    
   0.760
LOC110956744
Transcription factor CP2-like 1.
    
   0.760
ubp1
Upstream binding protein 1.
    
   0.760
LOC110960280
SplA/ryanodine receptor domain and SOCS box containing 3a.
     
 0.747
LOC110970099
SplA/ryanodine receptor domain and SOCS box containing 3b.
     
 0.746
tmem241
Transmembrane protein 241.
      
 0.695
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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