Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
aup1AUP1 lipid droplet regulating VLDL assembly factor. (415 aa)    
Predicted Functional Partners:
sel1l
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
    
 
 0.993
ube2g2
Ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.990
ube2j1
Ubiquitin-conjugating enzyme E2, J1.
   
 
 0.930
amfr
Autocrine motility factor receptor b.
    
 
 0.916
syvn1
Synovial apoptosis inhibitor 1, synoviolin.
    
 
 0.916
LOC110967486
Zgc:136908; Belongs to the AAA ATPase family.
  
 
 0.890
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
  
 
 0.890
faf2
Fas associated factor family member 2.
    
 
 0.885
LOC110946601
Ubiquitin-conjugating enzyme E2 variant 1.
     
  0.865
pla2g4a
Phospholipase A2.
     
 0.858
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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