LOC110959904 protein (Acanthochromis polyacanthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC110959904

Uncharacterized protein. (230 aa)

Predicted Functional Partners:

rabep1

0.707

LOC110956699

0.707

rab20

0.618

RAB31

0.618

LOC110966087

0.618

LOC110949572

0.618

LOC110961874

0.618

rab24

0.618

zhx2

0.618

LOC110952764

0.618

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC110949572	LOC110956699	ENSAPOP00000017139	ENSAPOP00000031539	Uncharacterized protein.	Rabaptin, RAB GTPase binding effector protein 2.	0.632
LOC110949572	LOC110959904	ENSAPOP00000017139	ENSAPOP00000006811	Uncharacterized protein.	Uncharacterized protein.	0.618
LOC110949572	LOC110961874	ENSAPOP00000017139	ENSAPOP00000018089	Uncharacterized protein.	RAB5A, member RAS oncogene family, a.	0.716
LOC110949572	RAB31	ENSAPOP00000017139	ENSAPOP00000013391	Uncharacterized protein.	RAB31, member RAS oncogene family.	0.440
LOC110949572	rabep1	ENSAPOP00000017139	ENSAPOP00000027791	Uncharacterized protein.	Rabaptin, RAB GTPase binding effector protein 1.	0.896
LOC110952764	LOC110956699	ENSAPOP00000027075	ENSAPOP00000031539	Uncharacterized protein.	Rabaptin, RAB GTPase binding effector protein 2.	0.632
LOC110952764	LOC110959904	ENSAPOP00000027075	ENSAPOP00000006811	Uncharacterized protein.	Uncharacterized protein.	0.618
LOC110952764	RAB31	ENSAPOP00000027075	ENSAPOP00000013391	Uncharacterized protein.	RAB31, member RAS oncogene family.	0.440
LOC110952764	rabep1	ENSAPOP00000027075	ENSAPOP00000027791	Uncharacterized protein.	Rabaptin, RAB GTPase binding effector protein 1.	0.896
LOC110956699	LOC110949572	ENSAPOP00000031539	ENSAPOP00000017139	Rabaptin, RAB GTPase binding effector protein 2.	Uncharacterized protein.	0.632
LOC110956699	LOC110952764	ENSAPOP00000031539	ENSAPOP00000027075	Rabaptin, RAB GTPase binding effector protein 2.	Uncharacterized protein.	0.632
LOC110956699	LOC110959904	ENSAPOP00000031539	ENSAPOP00000006811	Rabaptin, RAB GTPase binding effector protein 2.	Uncharacterized protein.	0.707
LOC110956699	LOC110961874	ENSAPOP00000031539	ENSAPOP00000018089	Rabaptin, RAB GTPase binding effector protein 2.	RAB5A, member RAS oncogene family, a.	0.632
LOC110956699	LOC110966087	ENSAPOP00000031539	ENSAPOP00000016985	Rabaptin, RAB GTPase binding effector protein 2.	Uncharacterized protein.	0.626
LOC110956699	RAB31	ENSAPOP00000031539	ENSAPOP00000013391	Rabaptin, RAB GTPase binding effector protein 2.	RAB31, member RAS oncogene family.	0.626
LOC110956699	rab20	ENSAPOP00000031539	ENSAPOP00000001197	Rabaptin, RAB GTPase binding effector protein 2.	RAB20, member RAS oncogene family.	0.626
LOC110956699	rab24	ENSAPOP00000031539	ENSAPOP00000021495	Rabaptin, RAB GTPase binding effector protein 2.	RAB24, member RAS oncogene family.	0.626
LOC110956699	rabep1	ENSAPOP00000031539	ENSAPOP00000027791	Rabaptin, RAB GTPase binding effector protein 2.	Rabaptin, RAB GTPase binding effector protein 1.	0.691
LOC110956699	zhx2	ENSAPOP00000031539	ENSAPOP00000023203	Rabaptin, RAB GTPase binding effector protein 2.	Zinc fingers and homeoboxes 2a.	0.626
LOC110959904	LOC110949572	ENSAPOP00000006811	ENSAPOP00000017139	Uncharacterized protein.	Uncharacterized protein.	0.618