Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC110966987Zinc finger protein, FOG family member 1. (1238 aa)    
Predicted Functional Partners:
LOC110947951
GATA binding protein 1a.
   
 0.999
LOC110955291
GATA binding protein 2a.
    
 0.928
GATA2
GATA binding protein 2.
    
 0.928
gata3
GATA binding protein 3.
    
 0.928
gata4
GATA binding protein 4.
   
 0.866
gata5
GATA binding protein 5.
   
 0.866
gata6
GATA binding protein 6.
   
 0.866
rbbp4
WD_REPEATS_REGION domain-containing protein.
    
 0.784
LOC110968098
WD_REPEATS_REGION domain-containing protein.
    
 0.784
LOC110945738
CAF1C_H4-bd domain-containing protein.
    
 0.784
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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