Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ddx52DEAD (Asp-Glu-Ala-Asp) box polypeptide 52. (701 aa)    
Predicted Functional Partners:
utp3
UTP3 small subunit processome component.
   
 0.999
pdcd11
Programmed cell death 11.
   
 0.999
dcaf13
Ddb1 and cul4 associated factor 13.
   
 0.998
nop14
NOP14 nucleolar protein homolog (yeast).
   
 0.998
fcf1
FCF1 rRNA-processing protein.
   
 0.996
noc4l
Nucleolar complex associated 4 homolog.
   
 0.996
UTP14C
UTP14C small subunit processome component.
   
 0.996
utp20
UTP20 small subunit processome component.
   
 0.995
heatr1
HEAT repeat containing 1.
   
 0.994
ddx47
DEAD (Asp-Glu-Ala-Asp) box polypeptide 47; Belongs to the DEAD box helicase family.
  
0.994
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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