Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC110963394Uncharacterized protein. (508 aa)    
Predicted Functional Partners:
LYPD6
LY6/PLAUR domain containing 6.
    
  0.885
LOC110962971
Cholinergic receptor, nicotinic, alpha 4b.
    
  0.813
LOC110952384
Cholinergic receptor, nicotinic, alpha 2b (neuronal).
    
  0.807
LOC110956416
Uncharacterized protein.
    
  0.807
LOC110948186
Cholinergic receptor, nicotinic, beta 3b (neuronal).
    
 0.736
LOC110963393
Uncharacterized protein.
    
 0.736
chrna5
Cholinergic receptor, nicotinic, alpha 5.
    
 0.736
LOC110955215
Si:ch211-39a7.1.
   
  0.667
LOC110972149
Neur_chan_memb domain-containing protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
   
 0.667
LOC110956564
Uncharacterized protein.
   
  0.667
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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