rab23 protein (Acanthochromis polyacanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rab23

RAB23, member RAS oncogene family. (235 aa)

Predicted Functional Partners:

rabggta

0.702

LOC110964817

0.698

ptar1

0.676

cplane2

0.665

LOC110966300

0.620

arl3

0.620

LOC110948090

0.590

rab2a

0.582

smo

0.554

dnajc27

0.541

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC110948090	LOC110964817	ENSAPOP00000008123	ENSAPOP00000034590	ADP ribosylation factor like GTPase 3, like 2; Belongs to the small GTPase superfamily. Arf family.	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	0.492
LOC110948090	rab23	ENSAPOP00000008123	ENSAPOP00000007010	ADP ribosylation factor like GTPase 3, like 2; Belongs to the small GTPase superfamily. Arf family.	RAB23, member RAS oncogene family.	0.590
LOC110964817	LOC110948090	ENSAPOP00000034590	ENSAPOP00000008123	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	ADP ribosylation factor like GTPase 3, like 2; Belongs to the small GTPase superfamily. Arf family.	0.492
LOC110964817	LOC110966300	ENSAPOP00000034590	ENSAPOP00000006279	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.492
LOC110964817	arl3	ENSAPOP00000034590	ENSAPOP00000020834	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	ADP ribosylation factor like GTPase 3; Belongs to the small GTPase superfamily. Arf family.	0.492
LOC110964817	cplane2	ENSAPOP00000034590	ENSAPOP00000031507	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	Ciliogenesis and planar polarity effector 2.	0.492
LOC110964817	dnajc27	ENSAPOP00000034590	ENSAPOP00000017101	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	DnaJ (Hsp40) homolog, subfamily C, member 27.	0.802
LOC110964817	ptar1	ENSAPOP00000034590	ENSAPOP00000031218	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	Protein prenyltransferase alpha subunit repeat containing 1.	0.979
LOC110964817	rab23	ENSAPOP00000034590	ENSAPOP00000007010	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	RAB23, member RAS oncogene family.	0.698
LOC110964817	rab2a	ENSAPOP00000034590	ENSAPOP00000007196	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	RAB2A, member RAS oncogene family.	0.810
LOC110964817	rabggta	ENSAPOP00000034590	ENSAPOP00000019414	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	Rab geranylgeranyltransferase subunit alpha.	0.992
LOC110966300	LOC110964817	ENSAPOP00000006279	ENSAPOP00000034590	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	0.492
LOC110966300	cplane2	ENSAPOP00000006279	ENSAPOP00000031507	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Ciliogenesis and planar polarity effector 2.	0.475
LOC110966300	rab23	ENSAPOP00000006279	ENSAPOP00000007010	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	RAB23, member RAS oncogene family.	0.620
arl3	LOC110964817	ENSAPOP00000020834	ENSAPOP00000034590	ADP ribosylation factor like GTPase 3; Belongs to the small GTPase superfamily. Arf family.	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	0.492
arl3	cplane2	ENSAPOP00000020834	ENSAPOP00000031507	ADP ribosylation factor like GTPase 3; Belongs to the small GTPase superfamily. Arf family.	Ciliogenesis and planar polarity effector 2.	0.475
arl3	rab23	ENSAPOP00000020834	ENSAPOP00000007010	ADP ribosylation factor like GTPase 3; Belongs to the small GTPase superfamily. Arf family.	RAB23, member RAS oncogene family.	0.620
cplane2	LOC110964817	ENSAPOP00000031507	ENSAPOP00000034590	Ciliogenesis and planar polarity effector 2.	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	0.492
cplane2	LOC110966300	ENSAPOP00000031507	ENSAPOP00000006279	Ciliogenesis and planar polarity effector 2.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.475
cplane2	arl3	ENSAPOP00000031507	ENSAPOP00000020834	Ciliogenesis and planar polarity effector 2.	ADP ribosylation factor like GTPase 3; Belongs to the small GTPase superfamily. Arf family.	0.475