Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
crppaCDP-L-ribitol pyrophosphorylase A. (445 aa)    
Predicted Functional Partners:
fktn
Fukutin.
     
 0.960
xpc
Xeroderma pigmentosum, complementation group C.
    
 0.929
sfi1
SFI1 centrin binding protein.
    
 0.918
nme9
NME/NM23 family member 8; Belongs to the NDK family.
   
 
 0.892
eny2
Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]
   
 
 0.864
ENSAPOP00000032746
Uncharacterized protein.
    
 0.846
ENSAPOP00000032748
WD_REPEATS_REGION domain-containing protein.
    
 0.846
pcid2
PCI domain containing 2.
    
 
 0.827
LOC110965386
Uncharacterized protein.
   
 0.814
LOC110955693
RAD23 homolog A, nucleotide excision repair protein a.
   
 0.814
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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