ENSAPOP00000007054 protein (Acanthochromis polyacanthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSAPOP00000007054

Uncharacterized protein. (355 aa)

Predicted Functional Partners:

ENSAPOP00000030863

0.625

LOC110950796

0.625

madd

0.611

snap25

0.587

LOC110966481

0.587

LOC110956326

0.544

ENSAPOP00000016008

0.525

RIMS2

0.525

LOC110950537

0.520

stx1a

0.520

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPOP00000007054	ENSAPOP00000016008	ENSAPOP00000007054	ENSAPOP00000016008	Uncharacterized protein.	PDZ domain-containing protein.	0.525
ENSAPOP00000007054	ENSAPOP00000030863	ENSAPOP00000007054	ENSAPOP00000030863	Uncharacterized protein.	Intersectin 2a.	0.625
ENSAPOP00000007054	LOC110950537	ENSAPOP00000007054	ENSAPOP00000002757	Uncharacterized protein.	Syntaxin 2b; Belongs to the syntaxin family.	0.520
ENSAPOP00000007054	LOC110950796	ENSAPOP00000007054	ENSAPOP00000032790	Uncharacterized protein.	Intersectin 2b.	0.625
ENSAPOP00000007054	LOC110956326	ENSAPOP00000007054	ENSAPOP00000024584	Uncharacterized protein.	Vesicle-associated membrane protein 5.	0.544
ENSAPOP00000007054	LOC110966481	ENSAPOP00000007054	ENSAPOP00000023377	Uncharacterized protein.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.587
ENSAPOP00000007054	RIMS2	ENSAPOP00000007054	ENSAPOP00000031587	Uncharacterized protein.	Regulating synaptic membrane exocytosis 2.	0.525
ENSAPOP00000007054	madd	ENSAPOP00000007054	ENSAPOP00000004887	Uncharacterized protein.	MAP-kinase activating death domain.	0.611
ENSAPOP00000007054	snap25	ENSAPOP00000007054	ENSAPOP00000014548	Uncharacterized protein.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.587
ENSAPOP00000007054	stx1a	ENSAPOP00000007054	ENSAPOP00000019634	Uncharacterized protein.	Syntaxin 1A (brain); Belongs to the syntaxin family.	0.520
ENSAPOP00000016008	ENSAPOP00000007054	ENSAPOP00000016008	ENSAPOP00000007054	PDZ domain-containing protein.	Uncharacterized protein.	0.525
ENSAPOP00000016008	LOC110950537	ENSAPOP00000016008	ENSAPOP00000002757	PDZ domain-containing protein.	Syntaxin 2b; Belongs to the syntaxin family.	0.669
ENSAPOP00000016008	LOC110956326	ENSAPOP00000016008	ENSAPOP00000024584	PDZ domain-containing protein.	Vesicle-associated membrane protein 5.	0.707
ENSAPOP00000016008	LOC110966481	ENSAPOP00000016008	ENSAPOP00000023377	PDZ domain-containing protein.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.688
ENSAPOP00000016008	RIMS2	ENSAPOP00000016008	ENSAPOP00000031587	PDZ domain-containing protein.	Regulating synaptic membrane exocytosis 2.	0.726
ENSAPOP00000016008	snap25	ENSAPOP00000016008	ENSAPOP00000014548	PDZ domain-containing protein.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.688
ENSAPOP00000016008	stx1a	ENSAPOP00000016008	ENSAPOP00000019634	PDZ domain-containing protein.	Syntaxin 1A (brain); Belongs to the syntaxin family.	0.669
ENSAPOP00000030863	ENSAPOP00000007054	ENSAPOP00000030863	ENSAPOP00000007054	Intersectin 2a.	Uncharacterized protein.	0.625
ENSAPOP00000030863	LOC110950796	ENSAPOP00000030863	ENSAPOP00000032790	Intersectin 2a.	Intersectin 2b.	0.958
ENSAPOP00000030863	LOC110956326	ENSAPOP00000030863	ENSAPOP00000024584	Intersectin 2a.	Vesicle-associated membrane protein 5.	0.717