LOC110959243 protein (Acanthochromis polyacanthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC110959243

Uncharacterized protein. (442 aa)

Predicted Functional Partners:

CUL5

0.777

LOC110965797

0.777

ndufs3

0.673

wdyhv1

0.658

ankef1

0.650

rnf7

0.635

slc25a32

0.632

tmem254

0.609

pus7

0.593

ndufs2

0.579

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUL5	LOC110959243	ENSAPOP00000023008	ENSAPOP00000007255	Cullin 5; Belongs to the cullin family.	Uncharacterized protein.	0.777
CUL5	rnf7	ENSAPOP00000023008	ENSAPOP00000032732	Cullin 5; Belongs to the cullin family.	Ring finger protein 7.	0.995
LOC110959243	CUL5	ENSAPOP00000007255	ENSAPOP00000023008	Uncharacterized protein.	Cullin 5; Belongs to the cullin family.	0.777
LOC110959243	LOC110965797	ENSAPOP00000007255	ENSAPOP00000024950	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.777
LOC110959243	ankef1	ENSAPOP00000007255	ENSAPOP00000003546	Uncharacterized protein.	Ankyrin repeat and EF-hand domain containing 1a.	0.650
LOC110959243	ndufs2	ENSAPOP00000007255	ENSAPOP00000006470	Uncharacterized protein.	NADH:ubiquinone oxidoreductase core subunit S2; Belongs to the complex I 49 kDa subunit family.	0.579
LOC110959243	ndufs3	ENSAPOP00000007255	ENSAPOP00000025776	Uncharacterized protein.	NADH:ubiquinone oxidoreductase core subunit S3; Belongs to the complex I 30 kDa subunit family.	0.673
LOC110959243	pus7	ENSAPOP00000007255	ENSAPOP00000025475	Uncharacterized protein.	Pseudouridine synthase 7.	0.593
LOC110959243	rnf7	ENSAPOP00000007255	ENSAPOP00000032732	Uncharacterized protein.	Ring finger protein 7.	0.635
LOC110959243	slc25a32	ENSAPOP00000007255	ENSAPOP00000015805	Uncharacterized protein.	Solute carrier family 25 member 32b; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.632
LOC110959243	tmem254	ENSAPOP00000007255	ENSAPOP00000007289	Uncharacterized protein.	Transmembrane protein 254.	0.609
LOC110959243	wdyhv1	ENSAPOP00000007255	ENSAPOP00000016152	Uncharacterized protein.	WDYHV motif containing 1.	0.658
LOC110965797	LOC110959243	ENSAPOP00000024950	ENSAPOP00000007255	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.777
LOC110965797	rnf7	ENSAPOP00000024950	ENSAPOP00000032732	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Ring finger protein 7.	0.995
ankef1	LOC110959243	ENSAPOP00000003546	ENSAPOP00000007255	Ankyrin repeat and EF-hand domain containing 1a.	Uncharacterized protein.	0.650
ndufs2	LOC110959243	ENSAPOP00000006470	ENSAPOP00000007255	NADH:ubiquinone oxidoreductase core subunit S2; Belongs to the complex I 49 kDa subunit family.	Uncharacterized protein.	0.579
ndufs2	ndufs3	ENSAPOP00000006470	ENSAPOP00000025776	NADH:ubiquinone oxidoreductase core subunit S2; Belongs to the complex I 49 kDa subunit family.	NADH:ubiquinone oxidoreductase core subunit S3; Belongs to the complex I 30 kDa subunit family.	0.999
ndufs2	slc25a32	ENSAPOP00000006470	ENSAPOP00000015805	NADH:ubiquinone oxidoreductase core subunit S2; Belongs to the complex I 49 kDa subunit family.	Solute carrier family 25 member 32b; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.412
ndufs2	tmem254	ENSAPOP00000006470	ENSAPOP00000007289	NADH:ubiquinone oxidoreductase core subunit S2; Belongs to the complex I 49 kDa subunit family.	Transmembrane protein 254.	0.922
ndufs3	LOC110959243	ENSAPOP00000025776	ENSAPOP00000007255	NADH:ubiquinone oxidoreductase core subunit S3; Belongs to the complex I 30 kDa subunit family.	Uncharacterized protein.	0.673