Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ddb2Damage-specific DNA binding protein 2. (413 aa)    
Predicted Functional Partners:
ddb1
Damage-specific DNA binding protein 1.
    
 0.999
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.997
cops2
COP9 signalosome subunit 2.
    
 0.997
xpc
Xeroderma pigmentosum, complementation group C.
   
 0.995
USP24
Ubiquitin specific peptidase 24; Belongs to the peptidase C19 family.
    
 0.993
cops3
COP9 signalosome subunit 3.
    
 0.993
cops4
COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis).
    
 0.992
cops8
COP9 signalosome subunit 8.
    
 0.991
gps1
G protein pathway suppressor 1.
    
  0.990
COPS6
COP9 signalosome subunit 6.
    
 0.989
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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