Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SCRT1Scratch family transcriptional repressor 1. (280 aa)    
Predicted Functional Partners:
usp10
Ubiquitin carboxyl-terminal hydrolase.
    
   0.470
fbxw11
F-box and WD repeat domain containing 11a.
    
 
 0.434
LOC110955662
Ventral anterior homeobox 2.
      
 0.421
rcor1
REST corepressor 1.
    
 0.415
rcor2
REST corepressor 2.
    
 0.415
LOC110962055
REST corepressor 3.
    
 0.415
LOC110959095
Dorsal root ganglia homeobox.
      
 0.405
dnajc2
DnaJ (Hsp40) homolog, subfamily C, member 2.
      
 0.403
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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