Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cgrrf1Cell growth regulator with ring finger domain 1. (325 aa)    
Predicted Functional Partners:
cgref1
Cell growth regulator with EF-hand domain 1.
      
 0.825
ankle2
Ankyrin repeat and LEM domain containing 2.
    
 
 0.714
rnf19b
RBR-type E3 ubiquitin transferase.
    
 0.694
RNF5
Ring finger protein 5.
      
 0.690
LOC110960706
Ring finger protein 170.
      
 0.671
sel1l
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
      
 0.670
LOC110967333
Zmp:0000000662.
    
 
 0.651
rnf145
Ring finger protein 145b.
    
 
 0.651
cnih1
Cornichon family AMPA receptor auxiliary protein 1.
      
 0.648
lsg1
Large 60S subunit nuclear export GTPase 1.
      
 0.626
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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