Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSAPOP00000007449GBP_C domain-containing protein. (185 aa)    
Predicted Functional Partners:
ATL2
Atlastin GTPase 2.
 
     0.933
fmr1
Fragile X mental retardation 1.
    
   0.604
reep1
Receptor expression-enhancing protein.
    
 
 0.600
LOC110970596
Reticulon.
    
 
 0.594
LOC110969401
Reticulon.
    
 
 0.556
rtn1
Reticulon.
    
 
 0.540
SPAST
Spastin; Belongs to the AAA ATPase family.
    
 
 0.526
LOC110965234
Spastin; Belongs to the AAA ATPase family.
    
 
 0.526
rtn4
Reticulon.
    
 
 0.526
ENSAPOP00000009218
Reticulon.
    
 
 0.497
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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