Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC110960411Matrix metallopeptidase 28. (517 aa)    
Predicted Functional Partners:
LOC110946601
Ubiquitin-conjugating enzyme E2 variant 1.
     
  0.796
timp4
TIMP metallopeptidase inhibitor 4, tandem duplicate 1.
    
 0.730
pla2g4a
Phospholipase A2.
     
  0.714
LOC110952234
Hemopexin; Binds heme and transports it to the liver for breakdown and iron recovery, after which the free hemopexin returns to the circulation.
      
 0.681
ARMC6
Armadillo repeat containing 6.
      
 0.660
sergef
Secretion regulating guanine nucleotide exchange factor.
      
 0.648
TIMP3
TIMP metallopeptidase inhibitor 3.
    
 0.635
LOC110962342
TIMP metallopeptidase inhibitor 2b.
    
 0.613
TIMP2
TIMP metallopeptidase inhibitor 2.
    
 0.613
LOC110959164
Furin (paired basic amino acid cleaving enzyme) a; Belongs to the peptidase S8 family.
    
 0.611
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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