STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC110960411Matrix metallopeptidase 28. (517 aa)    
Predicted Functional Partners:
timp4
TIMP metallopeptidase inhibitor 4, tandem duplicate 1.
    
 0.762
TIMP3
TIMP metallopeptidase inhibitor 3.
    
 0.712
LOC110962342
TIMP metallopeptidase inhibitor 2b.
    
 0.697
TIMP2
TIMP metallopeptidase inhibitor 2.
    
 0.697
LOC110959164
Furin (paired basic amino acid cleaving enzyme) a; Belongs to the peptidase S8 family.
   
 0.567
ENSAPOP00000007180
Collagen, type XXII, alpha 1.
    
  0.565
cd44
CD44 molecule (Indian blood group) b.
    
 0.552
furin
Furin (paired basic amino acid cleaving enzyme) b; Belongs to the peptidase S8 family.
   
 0.551
LOC110951240
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
    
 0.536
LOC110952174
Heparin-binding EGF-like growth factor a.
    
  0.535
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.