Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
palm2Uncharacterized protein. (227 aa)    
Predicted Functional Partners:
LOC110965207
PALM2-AKAP2 fusion.
 
    
 0.834
ENSAPOP00000026080
Uncharacterized protein.
 
      0.802
lrrc42
Leucine rich repeat containing 42.
      
 0.634
LOC110966987
Zinc finger protein, FOG family member 1.
      
 0.511
snap47
Synaptosome associated protein 47.
      
 0.492
ZBTB21
Zinc finger and BTB domain containing 21.
      
 0.427
ENSAPOP00000000728
Zinc finger and BTB domain containing 21.
      
 0.427
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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