Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lrtm2Leucine-rich repeats and transmembrane domains 2a. (400 aa)    
Predicted Functional Partners:
ripk2
Receptor-interacting serine-threonine kinase 2.
    
 0.906
pitx1
Homeobox protein.
      
 0.885
snx16
Sorting nexin 16.
      
 0.661
robo4
Roundabout, axon guidance receptor, homolog 4 (Drosophila).
   
 0.649
LOC110967111
Uncharacterized protein.
   
 0.649
LOC110963351
Uncharacterized protein.
   
 0.649
robo1
Roundabout, axon guidance receptor, homolog 1 (Drosophila).
   
 0.649
robo2
Roundabout, axon guidance receptor, homolog 2 (Drosophila).
   
 0.649
LOC110967301
Uncharacterized protein.
   
 0.649
LOC110951323
Homeobox protein.
      
 0.645
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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