LOC110956610 protein (Acanthochromis polyacanthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC110956610

Zmp:0000001114. (840 aa)

Predicted Functional Partners:

met

0.784

mst1r

0.782

LOC110972771

0.782

LOC110949682

0.765

hgfac

0.688

PTK7

0.679

ambp

0.672

ENSAPOP00000005471

0.667

ENSAPOP00000028536

0.667

LOC110957895

0.667

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPOP00000005471	ENSAPOP00000028536	ENSAPOP00000005471	ENSAPOP00000028536	Protein kinase domain-containing protein.	Ig-like domain-containing protein.	0.708
ENSAPOP00000005471	LOC110956610	ENSAPOP00000005471	ENSAPOP00000032943	Protein kinase domain-containing protein.	Zmp:0000001114.	0.667
ENSAPOP00000005471	LOC110957895	ENSAPOP00000005471	ENSAPOP00000029680	Protein kinase domain-containing protein.	Uncharacterized protein.	0.704
ENSAPOP00000005471	LOC110972771	ENSAPOP00000005471	ENSAPOP00000029186	Protein kinase domain-containing protein.	Uncharacterized protein.	0.785
ENSAPOP00000005471	PTK7	ENSAPOP00000005471	ENSAPOP00000032879	Protein kinase domain-containing protein.	Protein tyrosine kinase 7 (inactive); Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.784
ENSAPOP00000005471	hgfac	ENSAPOP00000005471	ENSAPOP00000026422	Protein kinase domain-containing protein.	HGF activator.	0.956
ENSAPOP00000005471	met	ENSAPOP00000005471	ENSAPOP00000016712	Protein kinase domain-containing protein.	MET proto-oncogene, receptor tyrosine kinase.	0.785
ENSAPOP00000005471	mst1r	ENSAPOP00000005471	ENSAPOP00000028101	Protein kinase domain-containing protein.	Macrophage stimulating 1 receptor b.	0.785
ENSAPOP00000028536	ENSAPOP00000005471	ENSAPOP00000028536	ENSAPOP00000005471	Ig-like domain-containing protein.	Protein kinase domain-containing protein.	0.708
ENSAPOP00000028536	LOC110956610	ENSAPOP00000028536	ENSAPOP00000032943	Ig-like domain-containing protein.	Zmp:0000001114.	0.667
ENSAPOP00000028536	LOC110957895	ENSAPOP00000028536	ENSAPOP00000029680	Ig-like domain-containing protein.	Uncharacterized protein.	0.704
ENSAPOP00000028536	LOC110972771	ENSAPOP00000028536	ENSAPOP00000029186	Ig-like domain-containing protein.	Uncharacterized protein.	0.785
ENSAPOP00000028536	PTK7	ENSAPOP00000028536	ENSAPOP00000032879	Ig-like domain-containing protein.	Protein tyrosine kinase 7 (inactive); Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.784
ENSAPOP00000028536	hgfac	ENSAPOP00000028536	ENSAPOP00000026422	Ig-like domain-containing protein.	HGF activator.	0.956
ENSAPOP00000028536	met	ENSAPOP00000028536	ENSAPOP00000016712	Ig-like domain-containing protein.	MET proto-oncogene, receptor tyrosine kinase.	0.785
ENSAPOP00000028536	mst1r	ENSAPOP00000028536	ENSAPOP00000028101	Ig-like domain-containing protein.	Macrophage stimulating 1 receptor b.	0.785
LOC110949682	LOC110956610	ENSAPOP00000030061	ENSAPOP00000032943	Tissue factor pathway inhibitor.	Zmp:0000001114.	0.765
LOC110949682	hgfac	ENSAPOP00000030061	ENSAPOP00000026422	Tissue factor pathway inhibitor.	HGF activator.	0.701
LOC110956610	ENSAPOP00000005471	ENSAPOP00000032943	ENSAPOP00000005471	Zmp:0000001114.	Protein kinase domain-containing protein.	0.667
LOC110956610	ENSAPOP00000028536	ENSAPOP00000032943	ENSAPOP00000028536	Zmp:0000001114.	Ig-like domain-containing protein.	0.667