STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111564496RRM domain-containing protein. (238 aa)    
Predicted Functional Partners:
LOC111577759
Uncharacterized protein.
   
 0.924
LOC111570127
Serine and arginine rich splicing factor 1a.
   
0.924
LOC111578995
Transformer 2 alpha homolog.
   
0.719
tra2b
Transformer 2 beta homolog.
   
0.719
LOC111571676
RRM domain-containing protein.
   
0.719
LOC111575271
RRM domain-containing protein.
   
0.701
SRSF3
Serine and arginine rich splicing factor 3b.
   
0.701
LOC111574934
Serine and arginine rich splicing factor 9.
    
 0.699
LOC111586944
Serine and arginine rich splicing factor 7a.
   
0.680
Srsf7
Serine and arginine rich splicing factor 7b.
   
0.680
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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