Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111564496RRM domain-containing protein. (238 aa)    
Predicted Functional Partners:
LOC111577759
Uncharacterized protein.
   
 0.947
LOC111570127
Serine and arginine rich splicing factor 1a.
   
 0.947
LOC111574934
Serine and arginine rich splicing factor 9.
   
 0.820
LOC111578995
Transformer 2 alpha homolog.
   
 0.810
tra2b
Transformer 2 beta homolog.
   
 0.810
LOC111571676
RRM domain-containing protein.
   
 0.810
LOC111586944
Serine and arginine rich splicing factor 7a.
   
 0.803
Srsf7
Serine and arginine rich splicing factor 7b.
   
 0.803
LOC111574240
HEXIM P-TEFb complex subunit 1.
    
 
 0.790
LOC111575271
RRM domain-containing protein.
   
 0.789
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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