Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cnot1CCR4-NOT transcription complex, subunit 1. (825 aa)    
Predicted Functional Partners:
cnot4
CCR4-NOT transcription complex, subunit 4a.
    
 0.994
cnot11
CCR4-NOT transcription complex, subunit 11.
    
 0.992
cnot10
CCR4-NOT transcription complex, subunit 10.
    
 0.991
LOC111586780
Uncharacterized protein.
   
 0.974
cnot3
CCR4-NOT transcription complex, subunit 3a.
   
 0.974
LOC111569864
CCR4-NOT transcription complex, subunit 7.
   
 0.964
LOC111586091
Uncharacterized protein.
   
 0.960
ENSAOCP00000014138
NOT2_3_5 domain-containing protein.
   
 0.960
LOC111563358
CCR4-NOT transcription complex, subunit 2.
   
 0.960
cnot8
CCR4-NOT transcription complex, subunit 8.
   
 0.959
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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