STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lypla2Lysophospholipase 2. (266 aa)    
Predicted Functional Partners:
gpcpd1
Glycerophosphocholine phosphodiesterase 1.
    
 0.945
LOC111576369
LRAT domain-containing protein.
   
 
 0.911
LOC111580109
LRAT domain-containing protein.
   
 
 0.909
LOC111583503
Patatin-like phospholipase domain containing 6.
  
 
  0.901
LOC111582244
Uncharacterized protein.
  
 
  0.901
chaf1b
Chromatin assembly factor 1, subunit B.
    
 
 0.746
ZNHIT6
Zinc finger HIT-type containing 6.
    
   0.719
gap43
Growth associated protein 43.
     
 0.615
nos1
Nitric oxide synthase; Produces nitric oxide (NO).
     
 0.595
abhd13
Abhydrolase domain containing 13.
     
 0.589
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.