Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
rnf19bRBR-type E3 ubiquitin transferase. (727 aa)    
Predicted Functional Partners:
trappc2
Trafficking protein particle complex 2.
    
 
 0.877
LOC111575075
Uridine-cytidine kinase; Belongs to the uridine kinase family.
    
 0.683
LOC111582051
Uridine-cytidine kinase; Belongs to the uridine kinase family.
    
 0.683
uckl1
Uridine-cytidine kinase; Belongs to the uridine kinase family.
    
 0.683
rnf216
Ring finger protein 216.
    
 0.638
LOC111583883
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.627
cgrrf1
Cell growth regulator with ring finger domain 1.
    
 0.621
LOC111575983
Uncharacterized protein.
    
   0.584
LOC111572178
DIRAS family, GTP-binding RAS-like 1b.
    
   0.584
ttc13
Tetratricopeptide repeat domain 13.
    
 0.561
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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