Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
rrp9Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein. (492 aa)    
Predicted Functional Partners:
nop58
NOP58 ribonucleoprotein homolog (yeast).
   
 0.999
fbl
Fibrillarin.
   
 0.999
snu13
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 0.995
utp4
UTP4 small subunit processome component.
   
 0.994
utp18
Uncharacterized protein.
   
 0.994
utp15
UTP15 small subunit processome component.
  
0.993
wdr43
WD repeat domain 43.
   
 0.992
LOC111568144
PWP2 small subunit processome component.
   
 0.992
noc4l
Nucleolar complex associated 4 homolog.
   
 
 0.992
wdr36
WD repeat domain 36.
   
 0.991
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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