STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf113aRing finger protein 113A. (322 aa)    
Predicted Functional Partners:
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
    
 
 0.997
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
   
 
 0.996
cwc27
CWC27 spliceosome associated cyclophilin.
   
 0.994
prpf19
Pre-mRNA processing factor 19.
    
 
 0.992
cwc22
MI domain-containing protein.
    
 0.992
dhx16
DEAH (Asp-Glu-Ala-His) box polypeptide 16.
   
 0.991
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
    
 0.987
sf3b2
Splicing factor 3b, subunit 2.
    
 
 0.964
bud13
BUD13 homolog.
    
 
 0.961
cwc15
CWC15 spliceosome associated protein homolog.
   
 
 0.954
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.