STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111577208Ras converting CAAX endopeptidase 1a. (322 aa)    
Predicted Functional Partners:
LOC111569570
Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.
    
 0.970
FNTA
Farnesyltransferase, CAAX box, alpha.
     
 0.968
icmt
Protein-S-isoprenylcysteine O-methyltransferase.
   
 0.960
zmpste24
CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family.
    
 
 0.784
churc1
Churchill domain containing 1.
    
 0.713
LOC111572193
Farnesyltransferase, CAAX box, alpha.
     
 0.694
oma1
OMA1 zinc metallopeptidase.
    
 
 0.620
CDC25B
Cell division cycle 25B.
     
 0.580
LOC111575363
Ubiquitin specific peptidase 42; Belongs to the peptidase C19 family.
     
 0.555
ENSAOCP00000011035
USP domain-containing protein; Belongs to the peptidase C19 family.
     
 0.555
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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