umps protein (Amphiprion ocellaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

umps

Uridine monophosphate synthetase. (487 aa)

Predicted Functional Partners:

dhodh

0.999

dpyd

0.997

cmpk1

0.982

upp2

0.954

LOC111572024

0.954

cmpk2

0.953

LOC111575075

0.940

LOC111582051

0.940

uckl1

0.940

uck1

0.939

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111572024	LOC111575075	ENSAOCP00000019057	ENSAOCP00000014078	Uridine phosphorylase; Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis.	Uridine-cytidine kinase; Belongs to the uridine kinase family.	0.934
LOC111572024	LOC111582051	ENSAOCP00000019057	ENSAOCP00000017268	Uridine phosphorylase; Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis.	Uridine-cytidine kinase; Belongs to the uridine kinase family.	0.934
LOC111572024	dhodh	ENSAOCP00000019057	ENSAOCP00000002311	Uridine phosphorylase; Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis.	Dihydroorotate dehydrogenase (quinone), mitochondrial; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.	0.788
LOC111572024	dpyd	ENSAOCP00000019057	ENSAOCP00000011473	Uridine phosphorylase; Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis.	Dihydropyrimidine dehydrogenase [NADP(+)]; Involved in pyrimidine base degradation. Catalyzes the reduction of uracil and thymine; Belongs to the dihydropyrimidine dehydrogenase family.	0.978
LOC111572024	uck1	ENSAOCP00000019057	ENSAOCP00000011757	Uridine phosphorylase; Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis.	Uridine-cytidine kinase; Belongs to the uridine kinase family.	0.935
LOC111572024	uckl1	ENSAOCP00000019057	ENSAOCP00000025308	Uridine phosphorylase; Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis.	Uridine-cytidine kinase; Belongs to the uridine kinase family.	0.934
LOC111572024	umps	ENSAOCP00000019057	ENSAOCP00000001054	Uridine phosphorylase; Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis.	Uridine monophosphate synthetase.	0.954
LOC111572024	upp2	ENSAOCP00000019057	ENSAOCP00000005676	Uridine phosphorylase; Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis.	Uridine phosphorylase; Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis.	0.901
LOC111575075	LOC111572024	ENSAOCP00000014078	ENSAOCP00000019057	Uridine-cytidine kinase; Belongs to the uridine kinase family.	Uridine phosphorylase; Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis.	0.934
LOC111575075	cmpk1	ENSAOCP00000014078	ENSAOCP00000027040	Uridine-cytidine kinase; Belongs to the uridine kinase family.	UMP-CMP kinase; Catalyzes the phosphorylation of pyrimidine nucleoside monophosphates at the expense of ATP. Plays an important role in de novo pyrimidine nucleotide biosynthesis. Has preference for UMP and CMP as phosphate acceptors. Also displays broad nucleoside diphosphate kinase activity; Belongs to the adenylate kinase family. UMP-CMP kinase subfamily.	0.945
LOC111575075	cmpk2	ENSAOCP00000014078	ENSAOCP00000023411	Uridine-cytidine kinase; Belongs to the uridine kinase family.	Cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial.	0.917
LOC111575075	dhodh	ENSAOCP00000014078	ENSAOCP00000002311	Uridine-cytidine kinase; Belongs to the uridine kinase family.	Dihydroorotate dehydrogenase (quinone), mitochondrial; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.	0.484
LOC111575075	uck1	ENSAOCP00000014078	ENSAOCP00000011757	Uridine-cytidine kinase; Belongs to the uridine kinase family.	Uridine-cytidine kinase; Belongs to the uridine kinase family.	0.546
LOC111575075	umps	ENSAOCP00000014078	ENSAOCP00000001054	Uridine-cytidine kinase; Belongs to the uridine kinase family.	Uridine monophosphate synthetase.	0.940
LOC111575075	upp2	ENSAOCP00000014078	ENSAOCP00000005676	Uridine-cytidine kinase; Belongs to the uridine kinase family.	Uridine phosphorylase; Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis.	0.934
LOC111582051	LOC111572024	ENSAOCP00000017268	ENSAOCP00000019057	Uridine-cytidine kinase; Belongs to the uridine kinase family.	Uridine phosphorylase; Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis.	0.934
LOC111582051	cmpk1	ENSAOCP00000017268	ENSAOCP00000027040	Uridine-cytidine kinase; Belongs to the uridine kinase family.	UMP-CMP kinase; Catalyzes the phosphorylation of pyrimidine nucleoside monophosphates at the expense of ATP. Plays an important role in de novo pyrimidine nucleotide biosynthesis. Has preference for UMP and CMP as phosphate acceptors. Also displays broad nucleoside diphosphate kinase activity; Belongs to the adenylate kinase family. UMP-CMP kinase subfamily.	0.945
LOC111582051	cmpk2	ENSAOCP00000017268	ENSAOCP00000023411	Uridine-cytidine kinase; Belongs to the uridine kinase family.	Cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial.	0.917
LOC111582051	dhodh	ENSAOCP00000017268	ENSAOCP00000002311	Uridine-cytidine kinase; Belongs to the uridine kinase family.	Dihydroorotate dehydrogenase (quinone), mitochondrial; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.	0.484
LOC111582051	uck1	ENSAOCP00000017268	ENSAOCP00000011757	Uridine-cytidine kinase; Belongs to the uridine kinase family.	Uridine-cytidine kinase; Belongs to the uridine kinase family.	0.546