STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111576686Zinc finger protein 219. (1217 aa)    
Predicted Functional Partners:
ZNF521
Zinc finger protein 521.
    
 
 0.605
LOC111576697
Bloodthirsty-related gene family, member 12.
   
 0.572
LOC111580192
Usher syndrome 1C binding protein 1.
  
 
   0.516
LOC111563084
Matrin-type domain-containing protein.
  
 
  0.514
ENSAOCP00000030690
Usher syndrome 1C.
    
 
 0.511
LOC111582576
AT rich interactive domain 5A (MRF1-like).
    
 0.451
PKP3
Plakophilin 3a.
    
 
 0.442
wrap53
WD repeat containing, antisense to TP53.
     
 0.442
sergef
Secretion regulating guanine nucleotide exchange factor.
    
 0.434
FAM181B
Family with sequence similarity 181 member B.
      
 0.431
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.