zfand4 protein (Amphiprion ocellaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

zfand4

Zinc finger, AN1-type domain 4. (729 aa)

Predicted Functional Partners:

rps27a

0.999

uba52

0.996

LOC111566873

0.996

LOC111572078

0.995

mysm1

0.987

katnal2

0.979

ubxn7

0.979

psma2

0.974

psmc1

0.974

birc6

0.959

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111566873	LOC111572078	ENSAOCP00000028617	ENSAOCP00000016642	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ubiquitin-conjugating enzyme E2 variant 1.	0.999
LOC111566873	birc6	ENSAOCP00000028617	ENSAOCP00000020342	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Baculoviral IAP repeat containing 6.	0.990
LOC111566873	katnal2	ENSAOCP00000028617	ENSAOCP00000017767	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.979
LOC111566873	mysm1	ENSAOCP00000028617	ENSAOCP00000015005	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Myb-like, SWIRM and MPN domains 1.	0.976
LOC111566873	psma2	ENSAOCP00000028617	ENSAOCP00000006142	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Proteasome subunit alpha type.	0.911
LOC111566873	psmc1	ENSAOCP00000028617	ENSAOCP00000021060	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Proteasome 26S subunit, ATPase 1b; Belongs to the AAA ATPase family.	0.932
LOC111566873	rps27a	ENSAOCP00000028617	ENSAOCP00000002842	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ribosomal protein S27a.	0.994
LOC111566873	uba52	ENSAOCP00000028617	ENSAOCP00000002979	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.900
LOC111566873	ubxn7	ENSAOCP00000028617	ENSAOCP00000024128	Ubiquitin A-52 residue ribosomal protein fusion product 1.	UBX domain protein 7.	0.954
LOC111566873	zfand4	ENSAOCP00000028617	ENSAOCP00000001108	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Zinc finger, AN1-type domain 4.	0.996
LOC111572078	LOC111566873	ENSAOCP00000016642	ENSAOCP00000028617	Ubiquitin-conjugating enzyme E2 variant 1.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.999
LOC111572078	birc6	ENSAOCP00000016642	ENSAOCP00000020342	Ubiquitin-conjugating enzyme E2 variant 1.	Baculoviral IAP repeat containing 6.	0.995
LOC111572078	mysm1	ENSAOCP00000016642	ENSAOCP00000015005	Ubiquitin-conjugating enzyme E2 variant 1.	Myb-like, SWIRM and MPN domains 1.	0.416
LOC111572078	psma2	ENSAOCP00000016642	ENSAOCP00000006142	Ubiquitin-conjugating enzyme E2 variant 1.	Proteasome subunit alpha type.	0.541
LOC111572078	rps27a	ENSAOCP00000016642	ENSAOCP00000002842	Ubiquitin-conjugating enzyme E2 variant 1.	Ribosomal protein S27a.	0.999
LOC111572078	uba52	ENSAOCP00000016642	ENSAOCP00000002979	Ubiquitin-conjugating enzyme E2 variant 1.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.999
LOC111572078	zfand4	ENSAOCP00000016642	ENSAOCP00000001108	Ubiquitin-conjugating enzyme E2 variant 1.	Zinc finger, AN1-type domain 4.	0.995
birc6	LOC111566873	ENSAOCP00000020342	ENSAOCP00000028617	Baculoviral IAP repeat containing 6.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.990
birc6	LOC111572078	ENSAOCP00000020342	ENSAOCP00000016642	Baculoviral IAP repeat containing 6.	Ubiquitin-conjugating enzyme E2 variant 1.	0.995
birc6	katnal2	ENSAOCP00000020342	ENSAOCP00000017767	Baculoviral IAP repeat containing 6.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.696