Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111581329Microtubule-associated protein. (402 aa)    
Predicted Functional Partners:
cdk5
Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.
    
 
 0.806
LOC111585205
Uncharacterized protein; Belongs to the synuclein family.
   
 
 0.788
LOC111562605
Uncharacterized protein.
    
 
 0.713
stub1
STIP1 homology and U-Box containing protein 1.
    
 
 0.699
gap43
Growth associated protein 43.
   
 
 0.694
LOC111578733
Ubiquitin-like domain-containing protein.
    
 
 0.686
APP
Amyloid beta precursor protein.
   
 
 0.682
LOC111568091
Amyloid beta (A4) precursor protein b.
   
 
 0.682
pin1
Peptidyl-prolyl cis-trans isomerase.
    
 
 0.681
gak
Cyclin G associated kinase.
   
 
 0.657
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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