STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rexo4REX4 homolog, 3'-5' exonuclease. (424 aa)    
Predicted Functional Partners:
rbm34
RNA binding motif protein 34.
   
 0.970
rbm28
RNA binding motif protein 28.
   
 
 0.920
cebpz
CCAAT enhancer binding protein zeta.
   
 
 0.912
rrp8
Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family.
   
   0.912
fam32a
Family with sequence similarity 32 member A.
      
 0.898
ddx24
DEAD (Asp-Glu-Ala-Asp) box helicase 24.
  
 0.888
rpl8
Ribosomal protein L8.
   
  0.865
P2ry11
Purinergic receptor P2Y11; Belongs to the G-protein coupled receptor 1 family.
   
   0.862
ppan
Peter pan homolog.
   
   0.862
wdr46
WD repeat domain 46.
   
   0.858
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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