STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111586956Uncharacterized protein. (270 aa)    
Predicted Functional Partners:
LOC111563410
Fibrinogen alpha chain.
   
 0.710
fgg
Fibrinogen gamma chain.
   
 0.665
ENSAOCP00000024693
Uncharacterized protein.
   
  0.647
hgd
Homogentisate 1,2-dioxygenase.
   
  
 0.645
fgb
Fibrinogen beta chain.
   
 0.578
hgfac
HGF activator.
   
 0.473
dgke
Diacylglycerol kinase.
      
 0.469
tnr
Tenascin R (restrictin, janusin).
    
  0.457
ENSAOCP00000019836
Fibronectin type-III domain-containing protein.
    
  0.457
LOC111580151
Zmp:0000000846.
    
  0.457
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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