STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hoxd4Homeobox D4a. (236 aa)    
Predicted Functional Partners:
hoxd3
Homeobox D3a.
  
  
0.934
hoxb5
Homeobox B5b.
   
 
0.810
LOC111568221
Homeobox B7a.
   
 
0.745
hoxc4
Homeobox C4a.
  
 
0.706
HOXA7
Homeobox A7.
   
 
0.692
LOC111570276
Homeobox A4.
  
 
0.653
LOC111569215
Homeobox domain-containing protein.
  
 
0.651
LOC111568223
Homeobox B4a.
  
  
0.648
hoxc6
Homeobox C6a.
   
 
0.636
LOC111588302
Homeobox B6b.
   
 
0.606
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.